#2472: switch to using nbsphinx + added readme steps to setup pandoc + revert changes

src/primaite/notebooks/Data-Manipulation-Customising-Red-Agent.ipynb

@@ -126,7 +126,13 @@
     "There are two important parts of the YAML config for varying red agent behaviour.\n",
     "\n",
     "### Red agent settings\n",
-    "Here is an annotated config for the red agent in the data manipulation scenario.\n",
+    "Here is an annotated config for the red agent in the data manipulation scenario."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
     "```yaml\n",
     "  - ref: data_manipulation_attacker  # name of agent\n",
     "    team: RED # not used, just for human reference\n",
@@ -171,10 +177,21 @@
     "        start_step: 25  # first attack at step 25\n",
     "        frequency: 20  # attacks will happen every 20 steps (on average)\n",
     "        variance: 5  # the timing of attacks will vary by up to 5 steps earlier or later\n",
-    "```\n",
-    "\n",
+    "```"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
     "### Malicious application settings\n",
-    "The red agent uses an application called `DataManipulationBot` which leverages a node's `DatabaseClient` to send a malicious SQL query to the database server. Here's an annotated example of how this is configured in the yaml *(with impertinent config items omitted)*:\n",
+    "The red agent uses an application called `DataManipulationBot` which leverages a node's `DatabaseClient` to send a malicious SQL query to the database server. Here's an annotated example of how this is configured in the yaml *(with impertinent config items omitted)*:"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
     "```yaml\n",
     "simulation:\n",
     "  network:\n",