#915 - Refactored documentation and included APi docs, dependencies.

- make files now re-build autosummary and deps file.
- Added typer and platformdirs to deps in pyproject.toml.
- Made root_is_pure = True in setup.py as platform/python specific wheels don't need to be built but the option is there should we need to.
-
Added an e2e test for primaite.main.run func.

pyproject.toml

@@ -29,9 +29,10 @@ dependencies = [
     "matplotlib==3.7.1",
     "networkx==3.1",
     "numpy==1.23.5",
+    "platformdirs==3.5.1",
     "PyYAML==6.0",
     "stable-baselines3==1.6.2",
-    "typer==0.9.0"
+    "typer[all]==0.9.0"
 ]
 
 [tool.setuptools.dynamic]
@@ -46,19 +47,22 @@ license-files = ["LICENSE"]
 
 [project.optional-dependencies]
 dev = [
-    "setuptools==66",
-    "pytest==7.2.0",
+    "build==0.10.0",
     "flake8==6.0.0",
-    "Sphinx==6.1.3",
     "furo==2023.3.27",
-    "sphinx-code-tabs==0.5.3",
-    "sphinx-copybutton==0.5.2",
-    "pytest-cov==4.0.0",
-    "pytest-flake8==1.1.1",
     "pip-licenses==4.3.0",
     "pre-commit==2.20.0",
-    "wheel==0.38.4",
-    "build==0.10.0"
+    "pytest==7.2.0",
+    "pytest-cov==4.0.0",
+    "pytest-flake8==1.1.1",
+    "setuptools==66",
+    "Sphinx==6.1.3",
+    "sphinx-code-tabs==0.5.3",
+    "sphinx-copybutton==0.5.2",
+    "wheel==0.38.4"
+]
+tensorflow = [
+    "tensorflow==2.12.0",
 ]
 
 [project.scripts]