Package restructuring

MANIFEST.in

@@ -0,0 +1 @@
+include src/primaite/config/*.yaml

docs/source/results.rst

@@ -10,9 +10,9 @@ PrimAITE produces four types of data:
 * Outputs - Saved agents
 * Logging
 
-Outputs can be found in the *[Install Directory]\\PRIMAITE\\PRIMAITE\\outputs* directory
+Outputs can be found in the *[Install Directory]\\Primaite\\Primaite\\outputs* directory
 
-Logging can be found in the *[Install Directory]\\PRIMAITE\\PRIMAITE\\logs* directory
+Logging can be found in the *[Install Directory]\\Primaite\\Primaite\\logs* directory
 
 **Outputs - Results**
 
@@ -39,4 +39,4 @@ For each training session, assuming the agent being trained implements the *save
 
 **Logging**
 
-PrimAITE also provides output logs (for diagnosis) using the Python Logging package. These can be found in the *[Install Directory]\\PRIMAITE\\PRIMAITE\\logs* directory
+PrimAITE also provides output logs (for diagnosis) using the Python Logging package. These can be found in the *[Install Directory]\\Primaite\\Primaite\\logs* directory

docs/source/session.rst

@@ -80,8 +80,8 @@ environment is reset between episodes. Note that the example below should not be
  
 In order to execute a session, carry out the following steps:
 
-1. Navigate to "[Install directory]\\PRIMAITE\\PRIMAITE\\” 
+1. Navigate to "[Install directory]\\Primaite\\Primaite\\”
-2. Start a console window (type “CMD” in path window, or start a console window first and navigate to “[Install Directory]\\PRIMAITE\\PRIMAITE\\”) 
+2. Start a console window (type “CMD” in path window, or start a console window first and navigate to “[Install Directory]\\Primaite\\Primaite\\”)
 3. Type “python main.py” 
 4. The session will start with an output indicating the current episode, and average reward value for the episode 
 

pyproject.toml

@@ -0,0 +1,60 @@
+[build-system]
+requires = ["setuptools", "setuptools-scm", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "primaite"
+description = "PrimAITE (Primary-level AI Training Environment) is a simulation environment for training AI under the ARCD programme."
+authors = [{name="QinetiQ Training and Simulation Ltd"}]
+license = {text = "GFX"}
+requires-python = ">=3.8"
+dynamic = ["version", "readme"]
+classifiers = [
+    "License :: GFX",
+    "Development Status :: 4 - Beta",
+    "Operating System :: Microsoft :: Windows",
+    "Operating System :: MacOS",
+    "Operating System :: POSIX :: Linux",
+    "Operating System :: Unix",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3 :: Only",
+]
+
+dependencies = [
+    "gym==0.21.0",
+    "matplotlib==3.7.1",
+    "networkx==3.1",
+    "numpy==1.23.5",
+    "PyYAML==6.0",
+    "stable-baselines3==1.6.2"
+]
+
+[tool.setuptools.dynamic]
+version = {file = ["src/primaite/VERSION"]}
+readme = {file = ["README.md"]}
+
+[tool.setuptools]
+package-dir = {"" = "src"}
+include-package-data = true
+license-files = ["LICENSE"]
+
+
+[project.optional-dependencies]
+dev = [
+    "setuptools==66",
+    "pytest==7.2.0",
+    "flake8==6.0.0",
+    "Sphinx==6.1.3",
+    "furo==2023.3.27",
+    "sphinx-code-tabs==0.5.3",
+    "sphinx-copybutton==0.5.2",
+    "pytest-cov==4.0.0",
+    "pytest-flake8==1.1.1",
+    "pip-licenses==4.3.0",
+    "wheel==0.38.4",
+    "build==0.10.0"
+]

setup.py

@@ -1,26 +1,17 @@
 # Crown Copyright (C) Dstl 2022. DEFCON 703. Shared in confidence.
-"""
+from setuptools import setup
-Setup
+from wheel.bdist_wheel import bdist_wheel as _bdist_wheel
-"""
 
-from setuptools import find_packages, setup
+
+class bdist_wheel(_bdist_wheel):  # noqa
+    def finalize_options(self):  # noqa
+        super().finalize_options()
+        # forces whee to be platform and Python version specific
+        # Source: https://stackoverflow.com/a/45150383
+        self.root_is_pure = False
 
 setup(
-    name="primaite",
+    cmdclass={
-    maintainer="QinetiQ Training and Simulation Ltd",
+        "bdist_wheel": bdist_wheel,
-    url="https://github.com/qtsl/PrimAITE",
+    }
-    description="A primary-level simulation tool",
+)
-    python_requires=">=3.7",
-    version="1.1.0",
-    install_requires=[
-        "gym==0.21.0",
-        "matplotlib==3.6.2",
-        "networkx==2.8.8",
-        "numpy==1.23.5",
-        "stable_baselines3==1.6.2",
-        # Required for older versions of Gym that aren't compliant with
-        # Setuptools>=67.
-        "setuptools==66"
-    ],
-    packages=find_packages()
-)

src/VERSION

@@ -0,0 +1 @@
+1.2.0

src/primaite/Main.py

@@ -1,6 +1,6 @@
 # Crown Copyright (C) Dstl 2022. DEFCON 703. Shared in confidence.
 """
-PRIMAITE - main (harness) module
+Primaite - main (harness) module
 
 Coding Standards: PEP 8
 """
@@ -12,9 +12,9 @@ import os.path
 import logging
 from datetime import datetime
 
-from environment.primaite import PRIMAITE
+from primaite.environment.primaite_env import Primaite
-from transactions.transactions_to_file import write_transaction_to_file
+from primaite.transactions.transactions_to_file import write_transaction_to_file
-from common.config_values_main import config_values_main
+from primaite.common.config_values_main import config_values_main
 
 from stable_baselines3 import PPO
 from stable_baselines3.ppo import MlpPolicy as PPOMlp
@@ -271,9 +271,9 @@ except Exception as e:
 # - new observation space  
 transaction_list = []
 
-# Create the PRIMAITE environment
+# Create the Primaite environment
 try:
-    env = PRIMAITE(config_values, transaction_list)
+    env = Primaite(config_values, transaction_list)
     logging.info("PrimAITE environment created")
 except Exception as e:
     logging.error("Could not create PrimAITE environment")

src/primaite/acl/access_control_list.py

@@ -3,7 +3,7 @@
 A class that implements the access control list implementation for the network
 """
 
-from acl.acl_rule import ACLRule
+from primaite.acl.acl_rule import ACLRule
 
 class AccessControlList():
     """

src/primaite/common/service.py

@@ -3,7 +3,7 @@
 The Service class
 """
 
-from common.enums import SOFTWARE_STATE
+from primaite.common.enums import SOFTWARE_STATE
 
 class Service(object):
     """

src/primaite/config/config_main.yaml

@@ -7,7 +7,7 @@
 # "GENERIC"
 agentIdentifier: STABLE_BASELINES3_A2C
 # Number of episodes to run per session
-numEpisodes: 10
+numEpisodes: 10000
 # Time delay between steps (for generic agents)
 timeDelay: 10
 # Filename of the scenario / laydown

src/primaite/environment/primaite_env.py

@@ -1,6 +1,6 @@
 # Crown Copyright (C) Dstl 2022. DEFCON 703. Shared in confidence.
 """
-Main environment module containing the PRIMmary AI Training Evironment (PRIMAITE) class
+Main environment module containing the PRIMmary AI Training Evironment (Primaite) class
 """
 
 import numpy as np
@@ -15,24 +15,24 @@ from gym import Env, spaces
 from matplotlib import pyplot as plt
 from datetime import datetime
 
-from common.enums import *
+from primaite.common.enums import *
-from links.link import Link
+from primaite.links.link import Link
-from pol.ier import IER
+from primaite.pol.ier import IER
-from nodes.node_state_instruction_green import NodeStateInstructionGreen
+from primaite.nodes.node_state_instruction_green import NodeStateInstructionGreen
-from nodes.node_state_instruction_red import NodeStateInstructionRed
+from primaite.nodes.node_state_instruction_red import NodeStateInstructionRed
-from pol.green_pol import apply_iers, apply_node_pol
+from primaite.pol.green_pol import apply_iers, apply_node_pol
-from pol.red_agent_pol import apply_red_agent_iers, apply_red_agent_node_pol
+from primaite.pol.red_agent_pol import apply_red_agent_iers, apply_red_agent_node_pol
-from nodes.active_node import ActiveNode
+from primaite.nodes.active_node import ActiveNode
-from nodes.passive_node import PassiveNode
+from primaite.nodes.passive_node import PassiveNode
-from nodes.service_node import ServiceNode
+from primaite.nodes.service_node import ServiceNode
-from common.service import Service
+from primaite.common.service import Service
-from acl.access_control_list import AccessControlList
+from primaite.acl.access_control_list import AccessControlList
-from environment.reward import calculate_reward_function
+from primaite.environment.reward import calculate_reward_function
-from transactions.transaction import Transaction
+from primaite.transactions.transaction import Transaction
 
-class PRIMAITE(Env):
+class Primaite(Env):
     """
-    PRIMmary AI Training Evironment (PRIMAITE) class
+    PRIMmary AI Training Evironment (Primaite) class
     """
 
     # Observation / Action Space contants
@@ -55,7 +55,7 @@ class PRIMAITE(Env):
             _agent_identifier: Identifier for the agent
         """
 
-        super(PRIMAITE, self).__init__()
+        super(Primaite, self).__init__()
 
         # Take a copy of the config values
         self.config_values = _config_values

src/primaite/environment/reward.py

@@ -3,9 +3,9 @@
 Implements reward function
 """
 
-from common.enums import *
+from primaite.common.enums import *
-from nodes.active_node import ActiveNode
+from primaite.nodes.active_node import ActiveNode
-from nodes.service_node import ServiceNode
+from primaite.nodes.service_node import ServiceNode
 
 def calculate_reward_function(initial_nodes, final_nodes, reference_nodes, green_iers, red_iers, step_count, config_values):
     """

src/primaite/links/link.py

@@ -3,8 +3,8 @@
 The link class
 """
 
-from common.protocol import Protocol
+from primaite.common.protocol import Protocol
-from common.enums import *
+from primaite.common.enums import *
 
 class Link(object):
     """

src/primaite/nodes/active_node.py

@@ -3,8 +3,8 @@
 An Active Node (i.e. not an actuator)
 """
 
-from nodes.node import Node
+from primaite.nodes.node import Node
-from common.enums import *
+from primaite.common.enums import *
 
 class ActiveNode(Node):
     """

src/primaite/nodes/node.py

@@ -3,7 +3,7 @@
 The base Node class
 """
 
-from common.enums import *
+from primaite.common.enums import *
 
 class Node:
     """

src/primaite/nodes/passive_node.py

@@ -3,7 +3,7 @@
 The Passive Node class (i.e. an actuator)
 """
 
-from nodes.node import Node
+from primaite.nodes.node import Node
 
 class PassiveNode(Node):
     """

src/primaite/nodes/service_node.py

@@ -3,8 +3,8 @@
 A Service Node (i.e. not an actuator)
 """
 
-from nodes.active_node import ActiveNode
+from primaite.nodes.active_node import ActiveNode
-from common.enums import *
+from primaite.common.enums import *
 
 class ServiceNode(ActiveNode):
     """

src/primaite/pol/green_pol.py

@@ -5,9 +5,9 @@ Implements Pattern of Life on the network (nodes and links)
 
 from networkx import shortest_path
 
-from common.enums import *
+from primaite.common.enums import *
-from nodes.active_node import ActiveNode
+from primaite.nodes.active_node import ActiveNode
-from nodes.service_node import ServiceNode
+from primaite.nodes.service_node import ServiceNode
 
 _VERBOSE = False
 

src/primaite/pol/red_agent_pol.py

@@ -5,9 +5,9 @@ Implements Pattern of Life on the network (nodes and links) resulting from the r
 
 from networkx import shortest_path
 
-from common.enums import *
+from primaite.common.enums import *
-from nodes.active_node import ActiveNode
+from primaite.nodes.active_node import ActiveNode
-from nodes.service_node import ServiceNode
+from primaite.nodes.service_node import ServiceNode
 
 _VERBOSE = False
 

src/primaite/transactions/transactions_to_file.py

@@ -9,7 +9,7 @@ import os.path
 
 from datetime import datetime
 
-from transactions.transaction import Transaction
+from primaite.transactions.transaction import Transaction
 
 def turn_action_space_to_array(_action_space):
     """

tests/test_acl.py

@@ -4,8 +4,8 @@
 Used to tes the ACL functions
 """
 
-from acl.acl_rule import ACLRule
+from primaite.acl.acl_rule import ACLRule
-from acl.access_control_list import AccessControlList
+from primaite.acl.access_control_list import AccessControlList
 
 def test_acl_address_match_1():
     """