#915 - Refactored documentation and included APi docs, dependencies.

- make files now re-build autosummary and deps file.
- Added typer and platformdirs to deps in pyproject.toml.
- Made root_is_pure = True in setup.py as platform/python specific wheels don't need to be built but the option is there should we need to.
-
Added an e2e test for primaite.main.run func.

tests/test_training_config.py

@@ -16,8 +16,7 @@ def test_legacy_lay_down_config_yaml_conversion():
     with open(new_path, "r") as file:
         new_dict = yaml.safe_load(file)
 
-    converted_dict = training_config.convert_legacy_training_config_dict(
-        legacy_dict)
+    converted_dict = training_config.convert_legacy_training_config_dict(legacy_dict)
 
     assert converted_dict == new_dict