## Summary
Added a page to explain how to use the Jupyter notebooks via jupyter command and VSCode
Also added Nick's suggestion to fix#2226
Going to be honest - not my finest pull request
## Test process
*How have you tested this (if applicable)?*
## Checklist
- [X] PR is linked to a **work item**
- [X] **acceptance criteria** of linked ticket are met
- [X] performed **self-review** of the code
- [ ] written **tests** for any new functionality added with this PR
- [X] updated the **documentation** if this PR changes or adds functionality
- [ ] written/updated **design docs** if this PR implements new functionality
- [ ] updated the **change log**
- [X] ran **pre-commit** checks for code style
- [ ] attended to any **TO-DOs** left in the code
#2369: commiting work done so far
Related work items: #2369
## Summary
Added a new optional capability to create a JSON log each episode with a list of action each agent took each step (including scripted, RL, and red agents).
Also I had to slightly refactor the IO system to not rely on PrimaiteSession, as it's gonna be deprecated soon. Therefore the IO module is now linked to the gym environment. Each time you init a gym environment, it creates a session directory.
## Test process
Tried the SB3, Ray SARL and Ray MARL notebooks to see that the outputs get generated.
## Checklist
- [x] PR is linked to a **work item**
- [x] **acceptance criteria** of linked ticket are met
- [x] performed **self-review** of the code
- [ ] written **tests** for any new functionality added with this PR
- [x] updated the **documentation** if this PR changes or adds functionality
- [ ] written/updated **design docs** if this PR implements new functionality
- [x] updated the **change log**
- [x] ran **pre-commit** checks for code style
- [x] attended to any **TO-DOs** left in the code
Move IO to environments from session and add agent logging
Related work items: #2278
- Enhance NicObservation for detailed NMNE event monitoring.
- Add nmne_config options to simulation settings for customizable NMNE capturing.
- Update documentation and tests for new NMNE features and simulation config.
## Summary
- Made the data manipulation red agent be able to choose between the two clients to start operating on
- changed the attacker name in the config to 'data_manipulation_attacker' to because it is no longer tied to any client
- Updated the documentation notebook accordingly.
- Fixed a bug where the database client made a new connection every time it sent a SQL query (it tries to reuse its most recent one instead)
- Fixed a bug where link loads were not being cleared between episodes (?)
**warning** - the green agents are not working properly after reset right now, but I'm gonna fix this in the next ticket where I refactor episode reset.
## Test process
- unit tests pass
- UC2 notebook passes with both clients. (currently this doesn't work after an episode reset, but the very next thing I'm gonna work on is refactoring the reset, so I don't want to waste time fixing this.)
## Checklist
- [x] PR is linked to a **work item**
- [x] **acceptance criteria** of linked ticket are met
- [x] performed **self-review** of the code
- [x] written **tests** for any new functionality added with this PR
- [ ] updated the **documentation** if this PR changes or adds functionality
- [ ] written/updated **design docs** if this PR implements new functionality
- [x] updated the **change log**
- [x] ran **pre-commit** checks for code style
- [n] attended to any **TO-DOs** left in the code
Related work items: #2232
