## Summary
The code changes are purely cosmetic- the result of applying pre-commit to all our files. I also added a pre-commit step to the build pipeline to reject non-conforming PRs
## Test process
I saw that the build pipeline passes with this new step.
## Checklist
- [ ] This PR is linked to a **work item**
- [x] I have performed **self-review** of the code
- [ ] I have written **tests** for any new functionality added with this PR
- [ ] I have updated the **documentation** if this PR changes or adds functionality
- [x] I have run **pre-commit** checks for code style
Related work items: #1557
- make files now re-build autosummary and deps file.
- Added typer and platformdirs to deps in pyproject.toml.
- Made root_is_pure = True in setup.py as platform/python specific wheels don't need to be built but the option is there should we need to.
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Added an e2e test for primaite.main.run func.
- renamed _config_values_main to training_config.py and renamed the ConfigValuesMain class to TrainingConfig.
Moved training_config.py to src/primaite/config/training_config.py
- Renamed all training config yaml file keys to make creating an instance of TrainingConfig easier.
Moved action_type and num_steps over to the training config.
- Decoupled the training config and lay down config.
- Refactored main.py so that it can be ran from CLI and can take a training config path and a lay down config path.
- refactored all outputs so that they save to the session dir.
- Added some necessary setup scripts that handle creating app dirs, fronting example config files to the user, fronting demo notebooks to the user, performing clean-up in between installations etc.
- Added functions that attempt to retrieve the file path of users example config files that have been fronted by the primaite setup.
- Added logging config and a getLogger function in the top-level init.
- Refactored all logs entries logged to use a logger using the primaite logging config.
- Added basic typer CLI for doing things like setup, viewing logs, viewing primaite version, running a basic session.
- Updated test to use new features and config structures.
- Began updating docs. More to do here.
Fixed the resetting operating state to set compromised or overwhelmed services or operating system back to a good state. Added a reset count that switches the node into a good state.
Created a "SHUTTING DOWN" operating state to last for a (configurable) and a "BOOTING" operating state to last for a (configurable).
Created a test file to test the reset changes the node to a good state when its set to a COMPROMISED state. The last two test tests makes sure that the node boots and shutdowns correctly.
Lastly, updated the docs file as well.
