Fix backup issues and align with Yak

src/primaite/config/_package_data/example_config.yaml

@@ -112,10 +112,8 @@ agents:
           - service_ref: domain_controller_dns_server
         - node_ref: web_server
           services:
-          - service_ref: web_server_database_client
+          - service_ref: web_server_web_service
         - node_ref: database_server
-          services:
-          - service_ref: database_service
           folders:
           - folder_name: database
             files:

src/primaite/game/agent/observations.py

@@ -555,7 +555,7 @@ class NodeObservation(AbstractObservation):
         folder_configs = config.get("folders", {})
         folders = [
             FolderObservation.from_config(
-                config=c, game=game, parent_where=where, num_files_per_folder=num_files_per_folder
+                config=c, game=game, parent_where=where + ["file_system"], num_files_per_folder=num_files_per_folder
             )
             for c in folder_configs
         ]

src/primaite/session/environment.py

@@ -23,7 +23,6 @@ class PrimaiteGymEnv(gymnasium.Env):
         super().__init__()
         self.game: "PrimaiteGame" = game
         self.agent: ProxyAgent = self.game.rl_agents[0]
-        self.flatten_obs: bool = False
 
     def step(self, action: ActType) -> Tuple[ObsType, SupportsFloat, bool, bool, Dict[str, Any]]:
         """Perform a step in the environment."""

src/primaite/simulator/system/services/database/database_service.py

@@ -5,6 +5,7 @@ from typing import Any, Dict, List, Literal, Optional, Union
 from primaite import getLogger
 from primaite.simulator.file_system.file_system import File
 from primaite.simulator.file_system.file_system_item_abc import FileSystemItemHealthStatus
+from primaite.simulator.file_system.folder import Folder
 from primaite.simulator.network.transmission.network_layer import IPProtocol
 from primaite.simulator.network.transmission.transport_layer import Port
 from primaite.simulator.system.core.software_manager import SoftwareManager
@@ -39,7 +40,6 @@ class DatabaseService(Service):
         kwargs["port"] = Port.POSTGRES_SERVER
         kwargs["protocol"] = IPProtocol.TCP
         super().__init__(**kwargs)
-        self._db_file: File
         self._create_db_file()
 
     def set_original_state(self):
@@ -49,7 +49,7 @@ class DatabaseService(Service):
         vals_to_include = {
             "password",
             "connections",
-            "backup_server",
+            "backup_server_ip",
             "latest_backup_directory",
             "latest_backup_file_name",
         }
@@ -86,8 +86,8 @@ class DatabaseService(Service):
         # send backup copy of database file to FTP server
         response = ftp_client_service.send_file(
             dest_ip_address=self.backup_server_ip,
-            src_file_name=self._db_file.name,
-            src_folder_name=self.folder.name,
+            src_file_name=self.db_file.name,
+            src_folder_name="database",
             dest_folder_name=str(self.uuid),
             dest_file_name="database.db",
         )
@@ -121,13 +121,10 @@ class DatabaseService(Service):
             return False
 
         # replace db file
-        self.file_system.delete_file(folder_name=self.folder.name, file_name="downloads.db")
-        self.file_system.copy_file(
-            src_folder_name="downloads", src_file_name="database.db", dst_folder_name=self.folder.name
-        )
-        self._db_file = self.file_system.get_file(folder_name=self.folder.name, file_name="database.db")
+        self.file_system.delete_file(folder_name="database", file_name="downloads.db")
+        self.file_system.copy_file(src_folder_name="downloads", src_file_name="database.db", dst_folder_name="database")
 
-        if self._db_file is None:
+        if self.db_file is None:
             self.sys_log.error("Copying database backup failed.")
             return False
 
@@ -137,8 +134,17 @@ class DatabaseService(Service):
 
     def _create_db_file(self):
         """Creates the Simulation File and sqlite file in the file system."""
-        self._db_file: File = self.file_system.create_file(folder_name="database", file_name="database.db")
-        self.folder = self.file_system.get_folder_by_id(self._db_file.folder_id)
+        self.file_system.create_file(folder_name="database", file_name="database.db")
+
+    @property
+    def db_file(self) -> File:
+        """Returns the database file."""
+        return self.file_system.get_file(folder_name="database", file_name="database.db")
+
+    @property
+    def folder(self) -> Folder:
+        """Returns the database folder."""
+        return self.file_system.get_folder_by_id(self.db_file.folder_id)
 
     def _process_connect(
         self, session_id: str, password: Optional[str] = None
@@ -171,12 +177,12 @@ class DatabaseService(Service):
         """
         self.sys_log.info(f"{self.name}: Running {query}")
         if query == "SELECT":
-            if self._db_file.health_status == FileSystemItemHealthStatus.GOOD:
+            if self.db_file.health_status == FileSystemItemHealthStatus.GOOD:
                 return {"status_code": 200, "type": "sql", "data": True, "uuid": query_id}
             else:
                 return {"status_code": 404, "data": False}
         elif query == "DELETE":
-            self._db_file.health_status = FileSystemItemHealthStatus.COMPROMISED
+            self.db_file.health_status = FileSystemItemHealthStatus.COMPROMISED
             return {"status_code": 200, "type": "sql", "data": False, "uuid": query_id}
         else:
             # Invalid query
@@ -231,3 +237,13 @@ class DatabaseService(Service):
         software_manager.send_payload_to_session_manager(payload=payload, session_id=session_id)
 
         return payload["status_code"] == 200
+
+    def apply_timestep(self, timestep: int) -> None:
+        """
+        Apply a single timestep of simulation dynamics to this service.
+
+        Here at the first step, the database backup is created, in addition to normal service update logic.
+        """
+        if timestep == 1:
+            self.backup_database()
+        return super().apply_timestep(timestep)

src/primaite/simulator/system/services/ftp/ftp_server.py

@@ -106,5 +106,6 @@ class FTPServer(FTPServiceABC):
         if payload.status_code is not None:
             return False
 
-        self.send(self._process_ftp_command(payload=payload, session_id=session_id), session_id)
+        # self.send(self._process_ftp_command(payload=payload, session_id=session_id), session_id)
+        self._process_ftp_command(payload=payload, session_id=session_id)
         return True

src/primaite/simulator/system/services/red_services/data_manipulation_bot.py

@@ -84,7 +84,7 @@ class DataManipulationBot(DatabaseClient):
         payload: Optional[str] = None,
         port_scan_p_of_success: float = 0.1,
         data_manipulation_p_of_success: float = 0.1,
-        repeat: bool = False,
+        repeat: bool = True,
     ):
         """
         Configure the DataManipulatorBot to communicate with a DatabaseService.

src/primaite/simulator/system/services/web_server/web_server.py

@@ -13,6 +13,7 @@ from primaite.simulator.network.transmission.network_layer import IPProtocol
 from primaite.simulator.network.transmission.transport_layer import Port
 from primaite.simulator.system.applications.database_client import DatabaseClient
 from primaite.simulator.system.services.service import Service
+from primaite.simulator.system.software import SoftwareHealthState
 
 _LOGGER = getLogger(__name__)
 
@@ -123,7 +124,10 @@ class WebServer(Service):
                 # get all users
                 if db_client.query("SELECT"):
                     # query succeeded
+                    self.set_health_state(SoftwareHealthState.GOOD)
                     response.status_code = HttpStatusCode.OK
+                else:
+                    self.set_health_state(SoftwareHealthState.COMPROMISED)
 
             return response
         except Exception: